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Home E-commerce Operations

5 Frustrating Cross-Border eCommerce Challenges and How to Overcome them

Munirat Khalid by Munirat Khalid
April 7, 2025
in E-commerce Operations

Cross-border eCommerce is growing rapidly, with global sales projected to exceed $7.9 trillion by 2030. While selling internationally offers enormous opportunities, it also comes with logistics and regulatory hurdles. 

High shipping costs, customs delays, and complex tax regulations can deter businesses from expanding globally. 

This guide explores key challenges and practical solutions to streamline international sales and ensure compliance with shipping and tax requirements.

Understanding Cross-Border eCommerce Logistics

cross-border eCommerce fulfillment process infographic

Cross-border eCommerce logistics refers to the processes and strategies involved in transporting products internationally while complying with each country’s regulations to ensure they reach customers efficiently without any delays. 

It covers everything from selecting shipping carriers and handling customs clearance to managing duties, taxes, and returns.

While expanding into international markets offers new revenue opportunities for eCommerce businesses, shipping across borders does come with some challenges. 

Managing cross-border eCommerce logistics requires careful planning to ensure smooth operations and a positive customer experience.

Unlike domestic shipping, cross-border logistics requires businesses to navigate multiple challenges, including complex regulations, selecting the right carriers, and optimizing fulfillment strategies to minimize costs and shipping delays.

Common Shipping Challenges in Cross-Border eCommerce

common shipping challenges in cross-border eCommerce infographic

1. Customs Delays and Compliance in Cross-Border eCommerce

According to a survey by Statista, 43 percent of supply chain specialists reveal that the major challenge cross-border businesses face is delays in customs clearance. 

The reason for this is incorrect or incomplete documentation—missing details or wrong HS codes in documents can cause customs delays. 

To avoid this, you want to automate paperwork and ensure invoices are accurate. 

Even with proper documentation, customs in some countries take longer to process shipments. High shipping volumes, manual inspections, and changing regulations can slow down shipping. 

To minimize delays, choose express shipping, use fulfillment centers in major markets, and avoid peak shipping seasons when customs backlogs are common.

Another reason for customs delays is restricted or prohibited items. Certain products can’t be imported into specific countries, some require extra certifications and approval to be shipped.

If you ship restricted goods without proper approval, your package may be delayed, returned, or confiscated. 

So, it’s important to always check import restrictions for your target markets, work with experienced logistics partners that are familiar with international shipping regulations, and also avoid high-risk products unless you have the right permits. 

2. High Shipping Costs

International shipping often incurs higher expenses that can cut into your profit margins, reduce your overall savings, and cause customers to abandon the checkout process, making your product less competitive. 

When you sell across borders, the cost of shipping increases due to international freight fees, fuel surcharges, import duties, and last-mile delivery expenses—all of which can add up quickly and reduce your profit margins, which can be prohibitive if you’re a small business. 

I’ve seen many businesses struggle to stay competitive because their shipping costs make products too expensive for customers. So, you need to be strategic about how you handle shipping. 

Partnering with reliable carriers, negotiating bulk shipping discounts, and using fulfillment centers in your target markets can help lower costs. 

You should also consider offering multiple shipping options for customers to choose, or if possible, factor shipping costs into your product pricing or offer free shipping on orders above a certain amount so you don’t compromise customer satisfaction.

3. Language Barriers  

Language barriers can disrupt nearly every stage of cross-border eCommerce, from order placement and delivery to customer support. 

If your product descriptions, checkout process, or shipping details aren’t in a language your customers understand, they may abandon their purchase. 

Even if they do buy, confusion over shipping terms, return policies, or tracking updates can result in frustration, complaints, and refunds.

Language differences can also affect customs documentation. If forms aren’t correctly translated or don’t match local requirements, shipments can be delayed, rejected, or even returned. 

This adds unnecessary costs and slows down your entire fulfillment process.

It can also make providing customer support and overall communication a hassle. 

If buyers or your logistics partners can’t communicate issues clearly—whether it’s about late shipments, damaged goods, or missing orders—they may lose trust in your brand. 

To overcome these challenges, consider offering multilingual customer support, localizing product listings, and properly translating shipping documents to improve customer satisfaction and avoid shipping errors and delays.

4. Returns and Refund Complications

Managing returns and refunds in cross-border eCommerce is often expensive and complex. Research from the National Retail Federation indicates that international return rates can reach up to 30%, significantly higher than the 8-10% seen with domestic orders. 

Navigating international shipping rules, customs procedures, and reverse logistics adds another layer of difficulty, making the process time-consuming and costly for businesses.

Factors like sizing discrepancies, unmet expectations, and product misrepresentation contribute to this issue, which particularly affects apparel. 

International return shipping can be expensive, cutting profit margins, especially for heavy items or businesses offering free returns. 

Customs regulations further complicate the process, as non-compliance can lead to delays, extra fees, or confiscation of goods. 

Additionally, return fraud is a growing concern, costing U.S. retailers over $100 billion annually. 

To mitigate these challenges, you should provide detailed product descriptions, implement region-specific sizing guides, create balanced return policies, partner with local warehouses, and stay updated on international customs regulations. 

These strategies help streamline the return process, reduce costs, and improve customer satisfaction.

5.  Exchange Rate Fluctuations

Fluctuating exchange rates create significant challenges in cross-border eCommerce, impacting everything from pricing stability to shipping costs and financial transactions. 

When currency values change, product prices can become unpredictable, making it harder to offer consistent pricing. 

If a buyer’s currency weakens, their purchasing power drops, potentially lowering demand and sales of your product. 

Similarly, currency fluctuations can increase shipping costs, especially when fuel and logistics expenses are priced in stronger foreign currency. 

Businesses also face exchange rate losses and additional conversion fees when processing payments in multiple currencies, with payment providers often charging extra for currency exchanges. 

Without a strategy to manage currency risks, businesses risk higher costs, reduced sales, and eroded customer trust.

Navigating Tax and Duty Complexities

Navigating taxes and duties in cross-border eCommerce is complex, with over 160 countries imposing VAT, GST, and import duties. 

Staying compliant requires ongoing research, as tax laws frequently change. This makes it easy to misclassify products or miss documentation requirements, both of which can cause customs delays and extra costs. 

One of the biggest challenges is the lack of transparency in duty and tax calculations, leading to frustrated customers. 

Research shows that 68% of shoppers have faced surprise customs charges upon delivery, with nearly half describing them as “shocking.” 

This lack of clarity also contributes to high cart abandonment rates, with 25% of buyers abandoning their purchase when final duties and taxes aren’t displayed at checkout. 

Currency exchange fluctuations and transaction fees add another layer of complexity, impacting pricing and profit margins. 

To mitigate these challenges, businesses should invest in automated tax calculation tools, clearly communicate potential fees upfront, and stay updated on changing tax regulations to ensure smooth international operations.

Best Practices for Cross-Border eCommerce Compliance

best practices for cross-border eCommerce compliance infographic

Running a successful cross-border eCommerce business requires you to comply with international regulations. 

Not following tax laws, customs rules, and product restrictions could increase fees and frustrate customers. To prevent this, here are some best cross-border practices to stay compliant: 

1. Understand Local Regulations

Every country has different tax laws, import duties, and compliance requirements, and if you don’t stay informed, you could face delays, fines, or even shipment seizures. 

Before selling in a new market, you need to research VAT, GST (goods and service tax), and customs regulations to avoid unexpected costs. 

Some countries require foreign sellers to register for tax collection, while others impose strict import restrictions on certain products. 

Ignoring these rules can create serious problems. For example, the European Union mandates that businesses selling to EU customers collect VAT at the point of sale, while Canada requires non-resident sellers to register for GST/HST if they exceed a certain sales threshold. You risk penalties or losing access to those markets if you don’t comply. 

You should also be aware of product-specific regulations. Some countries have restrictions on electronics, cosmetics, or food products, requiring special labeling or safety certifications.

To avoid these challenges, stay updated on regulatory changes and consult with local experts or legal advisors. Investing time in understanding local laws helps you prevent costly mistakes and ensures a smooth cross-border selling experience.

2. Provide Transparent Pricing

Unexpected fees frustrate customers and lead to abandoned carts. If you don’t display duties, taxes, and shipping costs upfront, your buyers may refrain when they see extra charges at delivery.

Nearly 47% of shoppers have encountered surprise customs fees and abandoned their carts at the checkout point.

To avoid this, I recommend using landed cost calculators that factor in all potential charges, including import duties and taxes. 

Many eCommerce platforms and payment gateways like Shopify, BigCommerce, Stripe, and PayPal offer tax automation tools that help ensure accurate pricing. 

You should also provide clear breakdowns of costs on product pages or at checkout so buyers know exactly what they’re paying for.

If you offer prepaid duties and taxes, you can simplify the buying experience by collecting these fees at checkout instead of leaving customers to deal with them upon delivery. This reduces disputes, improves trust, and increases conversions.

When you’re upfront about pricing, you not only comply with international trade regulations but also build credibility with customers. 

A transparent approach makes cross-border shopping smoother and encourages repeat purchases.

3. Classify Products Correctly 

Getting product classification right is critical in cross-border eCommerce. Every country uses the Harmonized System (HS) codes to determine import duties, taxes, and restrictions. 

If you misclassify a product, you could face delays, extra fees, or even shipment seizures.

To avoid these issues, you need to assign the correct HS code to every item you sell. 

These codes help customs officials quickly assess your products and apply the right tariffs. If you guess or use the wrong code, you risk paying higher duties or violating import regulations.

You should always double-check classifications using official customs databases or work with a customs broker to ensure accuracy. 

Some products fall into multiple categories, so it’s essential to choose the most precise classification to prevent disputes.

Accurate product classification speeds up customs clearance, reduces unexpected costs, and ensures a smoother experience for you and your customers.

4. Ensure Proper Documentation

Missing or incorrect paperwork can delay shipments, increase costs, or even result in customs rejecting your package. 

You need to provide accurate and complete documentation to avoid these issues. 

Essential documents include commercial invoices, packing lists, and certificates of origin. If you mislabel a product or fail to include the right forms, customs authorities might hold your shipment, causing delays that frustrate customers.

I recommend double-checking all required paperwork before shipping. Make sure product descriptions are clear, values are correct, and HS codes match the items being shipped. 

Some countries require additional documentation, like import permits or safety certifications, so always verify the specific requirements for each destination.

Automating this process with digital tools can help you minimize errors and speed up customs clearance. 

If you’re unsure about documentation, working with an experienced customs broker can save you time and prevent costly mistakes. 

Proper documentation isn’t just a formality—it ensures smooth shipping and a better experience for your customers.

5. Work with Experienced Logistics Partners

Cross-border shipping comes with complex regulations, and working with the right logistics partners can save you time, money, and frustration. 

If you try to handle international shipping alone, you’ll likely run into customs delays, unexpected fees, and compliance issues that can slow down your business.

A reliable logistics partner helps you navigate customs regulations, ensuring your shipments meet each country’s tax and duty requirements. 

They also streamline paperwork, reducing the risk of delays caused by missing or incorrect documentation. 

The best shipping providers offer real-time tracking, so you and your customers always know where a package is.

If you choose a logistics provider with established global networks, you’ll get better shipping rates and faster delivery times. 

Some partners also offer duty-paid shipping options, which means you can handle customs fees upfront, preventing unexpected charges for your customers.

Instead of dealing with cross-border shipping challenges on your own, you should work with an experienced partner who understands the process. This ensures smoother operations, happier customers, and fewer compliance headaches.

Conclusion

Expanding into cross-border eCommerce presents exciting growth opportunities, but it also comes with challenges. 

By following the practices provided in this article, along with strategic planning and staying compliant with taxes and regulations, you can optimize your supply chain operations and create a seamless experience for international buyers. 

Cross-border eCommerce FAQs 

What is cross-border eCommerce?

Cross-border eCommerce refers to the online sale of goods and services between businesses and consumers in different countries. 

It allows businesses to reach global customers through digital platforms, bypassing traditional retail borders. 

This includes direct-to-consumer (DTC) sales, marketplace transactions, and business-to-business (B2B) exports.

What are the challenges of cross-border eCommerce?

Some of the most common challenges businesses face include:

  • High shipping costs: International shipping is expensive, especially for small businesses with low order volumes.
  • Customs and import duties: Unexpected fees can frustrate customers and lead to abandoned carts.
  • Returns and refunds: Managing international returns can be costly and complicated.
  • Payment and currency issues: Handling multiple currencies and fluctuating exchange rates affects pricing and profit margins.
  • Compliance and regulations: Tax laws, restricted items, and trade regulations vary by country, making compliance difficult.

What are the leading challenges in cross-border eCommerce among supply chain professionals? 

A 2023 Statista survey found that nearly 43% of supply chain professionals cited customs delays as the major challenge in cross-border eCommerce. 

41% highlighted difficulties with customs regulations and Harmonized System (HS) codes, while many others struggled with escalating costs related to supply chains, tariffs, shipping, and returns.

Munirat Khalid

Munirat Khalid

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